1.4.0

Released 2023-06-09

Fixed

• Fix --diagnoses and --merged_tsv option bug in clinicadl get-labels

• Fix Pathlib bugs

• Fix get_tsv_paths function bug.

• Fix a bug for which it was impossible to use predict without specifying the splits and selection metrics.

Changed

• Changed default batch size to 8 for clinicadl predict

• Changed VAEs main class

New

• Add --n_proc option in clinicadl generate pipelines for parallelization.

• Add --split to clinicadl predict

• Add new VAE networks.

• Add pytorch function to summarize

• Add --size_reduction and --size_reduction_factor options to clinicadl train, clinicadl predict and clinicadl interpret.

• Add SSIM2D, SSIM3D metrics for VAE.

• Add --save_latent_space option to clinicadl train and clinicadl predict.

• Add clinicadl generate trvial_motion

• Add Data augmentation with torchio