clinicadl.io.bids

To read a BIDS directory.

Bids

A class to read BIDS datasets or BIDS derivatives (including CAPS).

File types

BidsFileType

To define the files you are interested in within your BIDS dataset.

T1Linear

BidsFileType to select T1-weighted MRI images preprocessed with Clinica t1-linear pipeline.

FlairLinear

BidsFileType to select Fluid-Attenuated Inversion Recovery (FLAIR) MRI images preprocessed with Clinica flair-linear pipeline.

PetLinear

BidsFileType to select Positron Emission Tomography (PET) images preprocessed with Clinica pet-linear pipeline.

DwiDti

BidsFileType to select Diffusion-Weighted MRI (DWI) images preprocessed with Clinica dwi-dti pipeline.